PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010542458.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family DBB
Protein Properties Length: 282aa    MW: 31695.9 Da    PI: 5.8207
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010542458.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.59.7e-07136179441
        zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 
                       C+ +e+ e++  C +++  lC++C ++ H        H++v+
  XP_010542458.1 136 IQCEVCEKAEAEVLCCSDEAVLCKSCDEKVHTAnklfqrHNRVT 179
                     57*****************************5578888898876 PP

2zf-B_box21.83.9e-07191227438
        zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 
                     + C+ ++e     fC +++ llC++C  ++Hk   H+
  XP_010542458.1 191 PLCDICQERTGYVFCLEDRALLCKNCDGAIHKCtsHQ 227
                     78******99********************9545675 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.0E-11133180IPR000315B-box-type zinc finger
PROSITE profilePS5011910.58133180IPR000315B-box-type zinc finger
CDDcd000215.19E-6136180No hitNo description
SMARTSM003361.8E-9188231IPR000315B-box-type zinc finger
PROSITE profilePS501199.001188232IPR000315B-box-type zinc finger
CDDcd000212.99E-7191230No hitNo description
PfamPF006431.6E-5191227IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MCSRELVNVL ASAAILLWSN YFITRRSGGL FFRPINAFWA ELLGELRDEN FQDFAAWEGN  60
GEFERTMLQN SSLLTFQGSF LVLLLINVQS HLPYTSRERI SQQLPDFVNL AIYKIQQSSV  120
SKISVGRTQT NPEMKIQCEV CEKAEAEVLC CSDEAVLCKS CDEKVHTANK LFQRHNRVTL  180
LKHNSTSSGI PLCDICQERT GYVFCLEDRA LLCKNCDGAI HKCTSHQRFL ASGVHVSLQS  240
CIEDSECSTS LSSSIFQIHP SGESEAGNSE VDLEKERHEG NR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010542458.10.0PREDICTED: uncharacterized protein LOC104815661 isoform X1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125022430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10240.17e-55DBB family protein